PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA021033-PA
Common NameOsI_23385
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 615aa    MW: 63616.2 Da    PI: 7.0573
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA021033-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.8e-084695061954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe+   +yp+ +e+  LA++ gL+ +qV++WF N R +
  BGIOSGA021033-PA 469 FENflRPYPKDSEKDMLAARSGLSRSQVSNWFINARVR 506
                       7766689*****************************88 PP

2BELL21.75.2e-083394041072
              BELL  10 akLlslleeVdkrYkqyveqlqtvissFeav...aglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +L +ll+ Vd++ +q+ve++q  ++ F+ +   +g g   + +++A +a++  +r ++ ++++q+
  BGIOSGA021033-PA 339 QRLRKLLQLVDEKCNQCVEEMQSTAARFNSMvrsTGGGGGGLTAAFAGRAVAAAYRRVRRRVMGQL 404
                       578899999*******************9873446889999*********************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075267.1E-13274400IPR006563POX domain
PROSITE profilePS5007111.791447510IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-25449522IPR009057Homeodomain-like
SMARTSM003895.4E-7450514IPR001356Homeobox domain
CDDcd000861.44E-11450511No hitNo description
SuperFamilySSF466892.48E-15450519IPR009057Homeodomain-like
PfamPF059201.6E-15467506IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MSTSSNPSYH QLGLDAISCC FVAGGGGAEA AAPFFGFGFG DVDGEFLVAS PVAAVGDELA  60
CAVPLRRPQG SVSEEEVNAA AVAAAAAGGA ESCSTVHSVL GSVEFGCGTS SGVTIAQASR  120
MGRLAGEAPC GDAGGGGWIY GGSGIAPLHG AYYLSGFSSG AGAGFLSPFA ASSVAAAAPA  180
ASELSLRLGA TKCSSPSSMA NASSEVSCSG LTHVSSGGGL GYHQAAAAGA GAALFHPTHG  240
DDAAAAAAGE LRQAYHSRAP PHFSQVVSRS AVLAHVAQEL LNGFVACLLQ DVAADAASGV  300
DGGEASQALS SGFSARITTA PTEDASPGSG GARWAAEAQR LRKLLQLVDE KCNQCVEEMQ  360
STAARFNSMV RSTGGGGGGL TAAFAGRAVA AAYRRVRRRV MGQLVAAATA RSSSSAAAAA  420
LEEKERSWES SFIQKHWAMQ QLRRGDQQSW RPQRGLPEKS VAVLKAWMFE NFLRPYPKDS  480
EKDMLAARSG LSRSQVSNWF INARVRLWKP MIEDMYEELK KTSGGSDGAA EIEHLSSKDV  540
LSLERSKKPS HLAVQCDGKH HDRFAVTQME GVFEEKGIEE IGKIRKTRSH ACMCMDVDSS  600
GYTRNKGWIG TPFIS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.830980.0panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037140.0AP003714.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0656E03.
GenBankAP0037620.0AP003762.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0456F09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641754.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_015641753.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLB8B3S30.0B8B3S3_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA021033-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.15e-48homeobox gene 1